Cloud Benchmarking for Performance

How can applications be deployed on the cloud to achieve maximum performance? This question has become significant and challenging with the availability of a wide variety of Virtual Machines (VMs) with different performance capabilities in the cloud. The above question is addressed by proposing a six step benchmarking methodology in which a user provides a set of four weights that indicate how important each of the following groups: memory, processor, computation and storage are to the application that needs to be executed on the cloud. The weights along with cloud benchmarking data are used to generate a ranking of VMs that can maximise performance of the application. The rankings are validated through an empirical analysis using two case study applications; the first is a financial risk application and the second is a molecular dynamics simulation, which are both representative of workloads that can benefit from execution on the cloud. Both case studies validate the feasibility of the methodology and highlight that maximum performance can be achieved on the cloud by selecting the top ranked VMs produced by the methodology.Comment: 6 pages, 6th IEEE International Conference on Cloud Computing Technology and Science (IEEE CloudCom) 2014, Singapor

Extensible Automated Constraint Modelling

In constraint solving, a critical bottleneck is the formulationof an effective constraint model of a given problem. The CONJURE system described in this paper, a substantial step forward over prototype versions of CONJURE previously reported, makes a valuable contribution to the automation of constraint modelling by automatically producing constraint models from their specifications in the abstract constraint specification language ESSENCE. A set of rules is used to refine an abstract specification into a concrete constraint model. We demonstrate that this set of rules is readily extensible to increase the space of possible constraint models CONJURE can produce. Our empirical results confirm that CONJURE can reproduce successfully the kernels of the constraint models of 32 benchmark problems found in the literature

Solvi : a visual constraint modeling tool

Current Funding Sources List: Natural Sciences and Engineering Research Council of Canada, Canada Award Number: 2020-04401 — Recipient: Miguel A Nacenta. Engineering and Physical Sciences Research Council, United Kingdom Award Number: DTG1796157 — Recipient: Xu Zhu.Discrete constraint problems surface often in everyday life. Teachers might group students with complex considerations and hospital administrators need to produce staff rosters. Constraint programming (CP) provides techniques to efficiently find solutions. However, there remains a key challenge: these techniques are still largely inaccessible because expressing constraint problems requires sophisticated programming and logic skills. In this work we contribute a language and tool that leverage knowledge of how non-experts conceptualize problems to facilitate the expression of constraint models. Additionally, we report the results of a study surveying the advantages and remaining challenges towards making CP accessible to the wider public.Publisher PDFPeer reviewe

Exploiting incomparability in solution dominance : improving general purpose constraint-based mining

In data mining, finding interesting patterns is a challenging task. Constraint-based mining is a well-known approach to this, and one for which constraint programming has been shown to be a well-suited and generic framework. Constraint dominance programming (CDP) has been proposed as an extension that can capture an even wider class of constraint-based mining problems, by allowing us to compare relations between patterns. In this paper we improve CDP with the ability to specify an incomparability condition. This allows us to overcome two major shortcomings of CDP: finding dominated solutions that must then be filtered out after search, and unnecessarily adding dominance blocking constraints between incomparable solutions. We demonstrate the efficacy of our approach by extending the problem specification language ESSENCE and implementing it in a solver-independent manner on top of the constraint modelling tool CONJURE. Our experiments on pattern mining tasks with both a CP solver and a SAT solver show that using the incomparability condition during search significantly improves the efficiency of dominance programming and reduces (and often eliminates entirely) the need for post-processing to filter dominated solutions.Publisher PD

Effective encodings of constraint programming models to SMT

Funding: UK EPSRC grant EP/P015638/1.Satisfiability Modulo Theories (SMT) is a well-established methodology that generalises propositional satisfiability (SAT) by adding support for a variety of theories such as integer arithmetic and bit-vector operations. SMT solvers have made rapid progress in recent years. In part, the efficiency of modern SMT solvers derives from the use of specialised decision procedures for each theory. In this paper we explore how the Essence Prime constraint modelling language can be translated to the standard SMT-LIB language. We target four theories: bit-vectors (QF_BV), linear integer arithmetic (QF_LIA), non-linear integer arithmetic (QF_NIA), and integer difference logic (QF_IDL). The encodings are implemented in the constraint modelling tool Savile Row. In an extensive set of experiments, we compare our encodings for the four theories, showing some notable differences and complementary strengths. We also compare our new encodings to the existing work targeting SMT and SAT, and to a well-established learning CP solver. Our two proposed encodings targeting the theory of bit-vectors (QF_BV) both substantially outperform earlier work on encoding to QF_BV on a large and diverse set of problem classes.Postprin

Cloud benchmarking for maximising performance of scientific applications

This research was pursued under the EPSRC grant, EP/K015745/1, a Royal Society Industry Fellowship and an AWS Education Research grant.How can applications be deployed on the cloud to achieve maximum performance? This question is challenging to address with the availability of a wide variety of cloud Virtual Machines (VMs) with different performance capabilities. The research reported in this paper addresses the above question by proposing a six step benchmarking methodology in which a user provides a set of weights that indicate how important memory, local communication, computation and storage related operations are to an application. The user can either provide a set of four abstract weights or eight fine grain weights based on the knowledge of the application. The weights along with benchmarking data collected from the cloud are used to generate a set of two rankings - one based only on the performance of the VMs and the other takes both performance and costs into account. The rankings are validated on three case study applications using two validation techniques. The case studies on a set of experimental VMs highlight that maximum performance can be achieved by the three top ranked VMs and maximum performance in a cost-effective manner is achieved by at least one of the top three ranked VMs produced by the methodology.PostprintPeer reviewe

Automated streamliner portfolios for constraint satisfaction problems

Funding: This work is supported by the EPSRC grants EP/P015638/1 and EP/P026842/1, and Nguyen Dang is a Leverhulme Early Career Fellow. We used the Cirrus UK National Tier-2 HPC Service at EPCC (http://www.cirrus.ac.uk) funded by the University of Edinburgh and EPSRC (EP/P020267/1).Constraint Programming (CP) is a powerful technique for solving large-scale combinatorial problems. Solving a problem proceeds in two distinct phases: modelling and solving. Effective modelling has a huge impact on the performance of the solving process. Even with the advance of modern automated modelling tools, search spaces involved can be so vast that problems can still be difficult to solve. To further constrain the model, a more aggressive step that can be taken is the addition of streamliner constraints, which are not guaranteed to be sound but are designed to focus effort on a highly restricted but promising portion of the search space. Previously, producing effective streamlined models was a manual, difficult and time-consuming task. This paper presents a completely automated process to the generation, search and selection of streamliner portfolios to produce a substantial reduction in search effort across a diverse range of problems. The results demonstrate a marked improvement in performance for both Chuffed, a CP solver with clause learning, and lingeling, a modern SAT solver.Publisher PDFPeer reviewe

Splanchnic vein thrombosis following renal transplantation: a case report

BACKGROUND: Recurrent episodes of venous thrombosis have been closely correlated with JAK2 V617F mutation. Upto date, JAK2 gene mutation has not been defined as a prothrombic risk factor in renal transplant recipients. Herein; we present a case of portosplenic vein thrombosis in a primary renal transplant recipient with JAK2 V617F mutation who had no history of prior venous thromboembolism or thrombophilia. CASE PRESENTATION: A 59 year old female caucasian patient with primary kidney transplant admitted with vague abdominal pain at left upper quadrant. Abdominal doppler ultrasound and magnetic resonance imaging angiography demonstrated splanchnic vein thrombosis (SVT). The final diagnosis was SVT due to MPD (essential thrombocytosis, ET) with JAK2 V617F mutation. After 3 months of treatment with warfarin (≥5 mg/day, to keep target INR values of 1.9-2.5), control MRI angiography and doppler USG demonstrated partial (>%50) resolution of thrombosis with recanalization of hepatopedal venous flow. The patient is still on the same treatment protocol without any complication. CONCLUSION: JAK2 V617F mutation analysis should be a routine procedure in the diagnosis and treatment of kidney transplant patients with thrombosis in uncommon sites

Automatic generation and selection of streamlined constraint models via Monte Carlo search on a model lattice

Funding: EPSRC EP/P015638/1.Streamlined constraint reasoning is the addition of uninferred constraints to a constraint model to reduce the search space, while retaining at least one solution. Previously it has been established that it is possible to generate streamliners automatically from abstract constraint specifications in Essence and that effective combinations of streamliners can allow instances of much larger scale to be solved. A shortcoming of the previous approach was the crude exploration of the power set of all combinations using depth and breadth first search. We present a new approach based on Monte Carlo search over the lattice of streamlined models, which efficiently identifies effective streamliner combinations.Postprin